RetrogeneDB ID: | retro_lafr_780 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_38:12296381..12296738(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSLAFG00000006572 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.42 % |
Parental protein coverage: | 69.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | DTALVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGSRAPVLVALALIEG |
D..LVEKEGI.VLDWPFDDGAPPSNQIVDDWLSLVKIKF.EEPGCCIAVHCVAG.GS.AP..VA.ALIE. | |
Retrocopy | DIVLVEKEGIQVLDWPFDDGAPPSNQIVDDWLSLVKIKFCEEPGCCIAVHCVAGFGS-APEFVA*ALIES |
Parental | GMKYEDAVQFIRQKRRG-AFNSKQLLYLEKYRPKMRLRFK-ESNGHRNNCCIQ |
GMKYEDA..F.RQK..G..FNSKQ.LYLEKY.PKM.L.F...S....N.CCIQ | |
Retrocopy | GMKYEDAGGFGRQKLHG<SFNSKQHLYLEKYCPKMQLHFR>SSSHRNN-CCIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |