RetrogeneDB ID: | retro_lafr_1054 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_62:9808524..9808859(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSLAFG00000006572 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.26 % |
Parental protein coverage: | 65.52 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGSRAPVLVALALIEGGMKYED |
KE.I.VLDWPFDDG..PS..IVDDWL.LV.IKF.EE..CC.AVHCVAG.G.R.PVLVALALIEGGMK.ED | |
Retrocopy | KEAIQVLDWPFDDGSSPSS*IVDDWLNLVYIKFHEE-ACCMAVHCVAGHG-RNPVLVALALIEGGMKNED |
Parental | AVQFIRQ-KRRGAFNSKQLLYLEKYRPKMRLRFKESNGHRNNCCI |
AVQFIR..K..GAFNSKQLLYLEKY..KMRL.FK.S.GHRNNCCI | |
Retrocopy | AVQFIRK<KWHGAFNSKQLLYLEKYHSKMRLCFKDSSGHRNNCCI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |