RetrogeneDB ID: | retro_lafr_939 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_5:58387210..58387521(-) | ||
Located in intron of: | ENSLAFG00000002795 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSLAFG00000006572 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.14 % |
Parental protein coverage: | 62.07 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTALVEKEGIHVLDWP- |
MA.MN.PAPV......MRFLITHNPTN.TLNKFIEELKKY....IVR..EAT...ALVEKEGI.VL.... | |
Retrocopy | MAGMNHPAPVQ----DMRFLITHNPTNTTLNKFIEELKKYSIASIVRIHEAT*NIALVEKEGI*VLNYS< |
Parental | FDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGL |
F.DG..PSN..VDDW.SL.K.KF.EE.G...AVH..AGL | |
Retrocopy | FSDGSLPSN*TVDDW*SLIKVKFHEELG*YFAVHHGAGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |