Parental gene: | PTP4A1, ENSECAG00000022483 |
| Aliases: | None |
| Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 20:56601653..56606026(+) |
>ENSECAG00000022483
ATGGCTCGAATGAACCGCCCAGCTCCTGTGGAAGTCACATACAAGAACATGAGATTTCTTATTACACACAATCCGACCAA
TGCAACCTTAAACAAATTCATAGAGGAACTTAAGAAGTATGGAGTTACCACAATAGTAAGAGTGTGTGAAGCAACTTATG
ACACTACTCTCGTGGAGAAAGAAGGCATCCATGTTCTCGACTGGCCTTTTGATGATGGTGCACCGCCATCCAACCAGATT
GTTGATGACTGGTTAAGTCTTGTGAAAATTAAGTTTCGTGAAGAACCTGGTTGTTGTATTGCTGTTCATTGTGTTGCAGG
CCTTGGGAGAGCTCCGGTGCTTGTCGCCCTAGCATTAATTGAAGGTGGGATGAAATATGAAGATGCAGTACAGTTCATAA
GACAAAAGCGGCGTGGGGCTTTTAACAGCAAGCAACTTTTGTATTTGGAAAAGTATCGTCCAAAAATGCGGCTGCGCTTC
AAAGACTCCAACGGTCATAGAAACAACTGTTGCGTTCAATAA
ATGGCTCGAATGAACCGCCCAGCTCCTGTGGAAGTCACATACAAGAACATGAGATTTCTTATTACACACAATCCGACCAA
TGCAACCTTAAACAAATTCATAGAGGAACTTAAGAAGTATGGAGTTACCACAATAGTAAGAGTGTGTGAAGCAACTTATG
ACACTACTCTCGTGGAGAAAGAAGGCATCCATGTTCTCGACTGGCCTTTTGATGATGGTGCACCGCCATCCAACCAGATT
GTTGATGACTGGTTAAGTCTTGTGAAAATTAAGTTTCGTGAAGAACCTGGTTGTTGTATTGCTGTTCATTGTGTTGCAGG
CCTTGGGAGAGCTCCGGTGCTTGTCGCCCTAGCATTAATTGAAGGTGGGATGAAATATGAAGATGCAGTACAGTTCATAA
GACAAAAGCGGCGTGGGGCTTTTAACAGCAAGCAACTTTTGTATTTGGAAAAGTATCGTCCAAAAATGCGGCTGCGCTTC
AAAGACTCCAACGGTCATAGAAACAACTGTTGCGTTCAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 14 .47 RPM |
| SRP021940_embryo | 45 .54 RPM |
| SRP021940_cerebellum | 22 .59 RPM |
| SRP021940_testis | 92 .27 RPM |
| SRP021940_placental_villous | 52 .97 RPM |
| SRP021940_articular_cartilage | 17 .35 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000002275 | ortholog_one2one | 3 retrogenes | |
| Echinops telfairi | ENSETEG00000008183 | ortholog_one2one | 6 retrogenes | |
| Latimeria chalumnae | ENSLACG00000007183 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000006572 | ortholog_one2one | 8 retrogenes | |
| Myotis lucifugus | ENSMLUG00000001162 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000002777 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000018701 | ortholog_one2many | 5 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000000440 | ortholog_one2one | 6 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000006311 | possible_ortholog | 4 retrogenes | |
| Ochotona princeps | ENSOPRG00000004938 | possible_ortholog | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000016743 | ortholog_one2one | 5 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000015225 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000011771 | possible_ortholog | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000046370 | possible_ortholog | 4 retrogenes | |
| Tupaia belangeri | ENSTBEG00000009956 | ortholog_one2many | 14 retrogenes | |
| Tursiops truncatus | ENSTTRG00000004129 | ortholog_one2one | 6 retrogenes | |
| Vicugna pacos | ENSVPAG00000004277 | possible_ortholog | 9 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_10 | 75.88 | 98.27 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ecab_20 | 88.44 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ecab_425 | 79.25 | 90.75 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ecab_783 | 56.00 | 57.80 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ecab_869 | 69.70 | 95.38 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ecab_1075 | 59.69 | 73.99 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000022483 retrocopies