RetrogeneDB ID: | retro_tbel_2124 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_101076:6856..7330(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSTBEG00000014931 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 65.85 % |
Parental protein coverage: | 88.65 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | EEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHETDKT |
..V.E.E..E.VVEKVLDR.VV.GKVEY.LK.K.F.D.DNTWEPEENLDCP.LI..FL.SQK...E.D.. | |
Retrocopy | KKVEEAEP*EFVVEKVLDRHVVNGKVEYFLK*K*FADADNTWEPEENLDCPELIEAFLNSQKAGKEKD-- |
Parental | EGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAK |
.G.KRK..SD.E.....S...K......KPRGF.RGL.PERIIGATDSS.ELMFL.KWK.SDEADLV.AK | |
Retrocopy | -GTKRKSLSDCESDDSKS---KMRDVADKPRGFTRGLDPERIIGATDSSEELMFLIKWKDSDEADLVLAK |
Parental | EANVKCPQVVISFYEERLTWHSYP |
EAN.KCP..VI.FYE.RLT.HS.P | |
Retrocopy | EANMKCPHIVIAFYEDRLT*HSCP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |