RetrogeneDB ID: | retro_tbel_3685 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_148398:33812..34331(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSTBEG00000014931 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 69.83 % |
Parental protein coverage: | 96.76 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS |
MGKK.N.K....V.E.E.EE.VVEKVLDR.VV.GKVEY.LKWKGF.D.DNTWEPEENLDCP.LI..FL.S | |
Retrocopy | MGKK*NGKS-KKVEEAEPEEFVVEKVLDRHVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNS |
Parental | QKTAHETDKTEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKN |
QK...E.D...G.KRK..SDSE.....SK.KKK.....KPRGFAR.L.PE.IIGATDSSGE.MFLMKWK. | |
Retrocopy | QKAGKEKD---GTKRKSLSDSES--DDSKSKKKRDAADKPRGFARDLDPE*IIGATDSSGEWMFLMKWKD |
Parental | SDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDD |
SDEADLV.AKEAN.KCPQ..I.FYEERLTWHSYP...D. | |
Retrocopy | SDEADLVLAKEANMKCPQIIIAFYEERLTWHSYPEDEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |