RetrogeneDB ID: | retro_tbel_303 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1690:421090..421539(+) | ||
Located in intron of: | ENSTBEG00000007476 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSTBEG00000014931 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 64.97 % |
Parental protein coverage: | 84.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS |
MGKKQN.K....V.E.E.EE.VVEKVLDRRVV.GKVEY.LKW.GF.D.DNTWEPEENLD..DLI..F..S | |
Retrocopy | MGKKQNGKS-KKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWEGFTDADNTWEPEENLDHLDLIEAFFNS |
Parental | QKTAHETDKTEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDS-SGELMFLMKWK |
QK...E.D...G.KRK..SDSE.....SK.KKKK....KPRG.ARGL.PE.IIGATD...GE.M.LM.W. | |
Retrocopy | QKAGKEKD---GTKRKSLSDSE--SDDSKSKKKKDAADKPRGLARGLDPEWIIGATDN<QGEWMLLMRWE |
Parental | NSDEADLVPAKEANVKC |
.SDEADLV.A.EAN..C | |
Retrocopy | DSDEADLVLATEANCNC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |