RetrogeneDB ID: | retro_tbel_2713 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_117337:115802..116300(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSTBEG00000014931 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 68.02 % |
Parental protein coverage: | 92.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS |
MGKKQN.K..E.V.E...E..VVEKVLD.RVV.GKVEY.LKWKGF....NTWEPE.N.DCP.LI..FL.S | |
Retrocopy | MGKKQNGKS-EKVEEAGPEGFVVEKVLD*RVVNGKVEYFLKWKGFTGAANTWEPEDNADCPELIEVFLNS |
Parental | QKTAHETDKTEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKN |
QK...E.D.T...KRK..SDSE.....SK.KKK.....KPRGFARGL.PER..GATDSSGE.M.LMKWK. | |
Retrocopy | QKAGKEKDST---KRKSYSDSEP--DDSKSKKKRDAADKPRGFARGLDPERVLGATDSSGEWMLLMKWKD |
Parental | SDEADLVPAKEANVKCPQVVISFYEERLTWHS |
SDEADLV.AKEAN.KCPQ.VI.F.EERLTWHS | |
Retrocopy | SDEADLVLAKEANMKCPQIVIAFHEERLTWHS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |