RetrogeneDB ID: | retro_tbel_4611 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_93059:1139..1650(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSTBEG00000014931 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 66.29 % |
Parental protein coverage: | 95.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS |
MGKKQN.K....V.E.E.EE.VVEKVLDR..V.GKVEY.LKWKGF.D.DNTWEPEENLDCP..I..FL.S | |
Retrocopy | MGKKQNGKS-KKVEEAEPEESVVEKVLDRSIVNGKVEYFLKWKGFTDADNTWEPEENLDCPEFIEAFLNS |
Parental | QKTAHETDKTEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKN |
QK...E.D...G.KRK..SDSE.....S...KK.....KPRG.ARGL.PE..IGATDSSGE.MFLMKWK. | |
Retrocopy | QKAGKEKD---GTKRKSLSDSESDDSKS---KKRDAADKPRGLARGLDPEWKIGATDSSGEWMFLMKWKE |
Parental | SDEADLVPAKEANVKCPQVVISFYEERLTW-HSYPSED |
S.EADLV.AKEA..KCPQ.VI.FYEERLTW.HS.P... | |
Retrocopy | SEEADLVLAKEASMKCPQIVIAFYEERLTW>HSCPEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |