RetrogeneDB ID: | retro_tbel_4202 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_71661:6061..6398(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSTBEG00000014931 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 58.97 % |
Parental protein coverage: | 62.7 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | KWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHETDKTEGGKRKADSDSEDKGEESKPKKKKEE-SEK |
KWKGF.DE.NT.EPEENLD.P.LIAE..Q.QKTAHET..TE...R...S......E..K.K.K..E...K | |
Retrocopy | KWKGFRDE-NT*EPEENLDYPGLIAESVQ*QKTAHETHETE---RQEQSSFGF*SEGKKSKPKNKE>NQK |
Parental | PRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKC |
......GLE.E.IIGAT.SS.E.MFLMKWKN..E.DLVP.KEA.V.C | |
Retrocopy | TTWLYLGLELEWIIGATFSSREFMFLMKWKNPHESDLVPIKEAEVNC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |