RetrogeneDB ID: | retro_sscr_635 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 2:117871447..117871846(+) | ||
Located in intron of: | ENSSSCG00000014190 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSSSCG00000017529 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 83.58 % |
Parental protein coverage: | 72.43 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | KKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHE |
K....EVLEEE.EEYVV..VL....VKGK.EYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHE | |
Retrocopy | KXXXXEVLEEEREEYVV*QVLNIQMVKGKAEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHE |
Parental | TDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKN |
TDKSEGGK.KADSDS..KGEESKPKKKK.E.EKP.GFA..LEP.RII.ATDSSGELMFLMKWKN | |
Retrocopy | TDKSEGGKSKADSDSVHKGEESKPKKKK-EPEKP*GFAQRLEPGRIIRATDSSGELMFLMKWKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 12 .34 RPM |
SRP014902_testis | 0 .00 RPM | 71 .43 RPM |
SRP018288_heart | 0 .00 RPM | 42 .88 RPM |
SRP018288_kidney | 0 .00 RPM | 61 .86 RPM |
SRP018288_liver | 0 .00 RPM | 34 .70 RPM |
SRP018288_lung | 0 .81 RPM | 41 .65 RPM |
SRP018856_adipose | 0 .00 RPM | 69 .62 RPM |
SRP035408_brain | 0 .00 RPM | 141 .37 RPM |
SRP035408_liver | 0 .00 RPM | 45 .33 RPM |