RetrogeneDB ID: | retro_tbel_687 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_2751:86183..86674(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSTBEG00000014931 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 78.31 % |
Parental protein coverage: | 89.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ-SQKTAHETDKTEGGKRKADS |
.VVEKVLDR.VVKGKVEYLLKWKGFSDEDNTWEPEENLDC.DLIAE.LQ.SQ...H..........KADS | |
Retrocopy | HVVEKVLDRQVVKGKVEYLLKWKGFSDEDNTWEPEENLDCRDLIAECLQ<SQRKQHRRQIKQREASKADS |
Parental | DSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQV |
D.EDKGEESKPKK..EESEKPRGFAR.LEPE.IIGATDSSGEL.FLMKWKNS.EA.LVPA.E.NVKCPQ. | |
Retrocopy | DPEDKGEESKPKKT-EESEKPRGFARTLEPELIIGATDSSGELKFLMKWKNSHEAGLVPAREVNVKCPQL |
Parental | VISFYEERLTWHSYPSEDDDKKDDKN |
VISF.EERLT.HSY..E.DD.K.DKN | |
Retrocopy | VISFCEERLTCHSYT*ENDDQKYDKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |