RetrogeneDB ID: | retro_tbel_2130 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_101559:739..1195(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSTBEG00000014931 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 54.09 % |
Parental protein coverage: | 85.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS |
MGK.QN.K..E.V.E.E.EE..VE..LDRR.V.GKV.Y..KWKGF.D...TWEP.EN..CP..I...L.S | |
Retrocopy | MGKGQN*KS-ENVEEAEPEECEVEEALDRRAVNGKVDYFPKWKGFTDAGSTWEPGENVGCPEFIEASLNS |
Parental | QKTAHETDKTEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKN |
Q....E.D...G.KR...S.SE.........KK.....KPRGFAR.L.P.R..GATD.SG..M.L..WK. | |
Retrocopy | QRAGKEKD---GAKRTSLSVSE---ADDSTSKKRDAADKPRGFARALDPARVTGATDGSGAQMLLTSWKD |
Parental | SDEADLVPAKEANVKCPQV |
SDEADLV..KEAN.KCPQ. | |
Retrocopy | SDEADLVLGKEANMKCPQI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |