RetrogeneDB ID: | retro_tbel_793 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_303:112064..112577(+) | ||
Located in intron of: | ENSTBEG00000014086 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSTBEG00000014931 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 69.49 % |
Parental protein coverage: | 95.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS |
MGKKQN.K....V.E.E.EE.VVEKVLD.RVV.GKVEY.LKW.GF.D.DNTWEPEENLDCP.LI..FL.S | |
Retrocopy | MGKKQNGKS-KKVEEAEPEEFVVEKVLDQRVVNGKVEYFLKWEGFTDADNTWEPEENLDCPELIEAFLNS |
Parental | QKTAHETDKTEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKN |
QK...E.D...G.KRK..SDSE.....SK.KKK.....KPRGFARGL.PERIIGATDSSGELMFLMKWK. | |
Retrocopy | QKAGKEKD---GTKRKSLSDSES--DDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLMKWKD |
Parental | SDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSED |
SDEADLV.AKE.N.KCPQ.V..FYE.RLTW.S.P... | |
Retrocopy | SDEADLVLAKETNMKCPQIVTAFYEKRLTWLSCPEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |