RetrogeneDB ID: | retro_tbel_2587 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_113584:62703..62969(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSTBEG00000014931 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 57.29 % |
Parental protein coverage: | 51.35 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | FLQSQKTAHETDKTEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGE-LMFL |
FL.SQK...E.D...G.KR...SDSE.....S...KK.....K.RGFARGL.P..IIGATDSSG...M.L | |
Retrocopy | FLNSQKASKEKD---GTKRTPLSDSESDHSKS---KKRDVADK*RGFARGLDPG*IIGATDSSGR<WMLL |
Parental | MKWKNSDEADLVPAKEANVKCPQVVI |
.KWK.SDEADLV.AK....KCPQ.VI | |
Retrocopy | IKWKDSDEADLVLAKKQI*KCPQIVI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |