RetrogeneDB ID: | retro_tbel_484 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_2208:185579..186033(-) | ||
Located in intron of: | ENSTBEG00000017201 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSTBEG00000014931 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 54.94 % |
Parental protein coverage: | 86.49 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKT |
....K.V..V.E...E...VEKVL.....KG....LLKWKGF.D.DN.WEPEENLD.P.LI..FL.SQK. | |
Retrocopy | RDRMKRVKKV*EADPE*FMVEKVLNCMNAKG--DCLLKWKGFTDADNAWEPEENLDHPELIEAFLNSQKA |
Parental | AHETDKTEGGKRKAD-SDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSD |
..E.....G..RK...SD.E.....SK...K.....KPRGFARGL.PE.I.G..DSSGELMFLM..K.SD | |
Retrocopy | GKE---KHGAERKSY<SDREPNDSKSK---KRDATDKPRGFARGLDPELIFGTMDSSGELMFLMT*KDSD |
Parental | EADLV-PAKEANVKCPQVVISF |
EADLV..AK.AN.KCP..VI.F | |
Retrocopy | EADLV<AAKKANMKCP*IVIAF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |