RetrogeneDB ID: | retro_tbel_2281 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_108488:91018..91400(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSTBEG00000014931 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 70.68 % |
Parental protein coverage: | 71.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SDEDNTWEPEENLDCPDLIAEFLQSQKTAHETDKTEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFAR |
.D.DNTWEPEENLDCP.LI..FL.SQK...E.D...G.KRK..SDSE.....SK.KKK.....K.RGFAR | |
Retrocopy | TDADNTWEPEENLDCPELIEAFLNSQKAGKEKD---GTKRKSLSDSES--DDSKSKKKGGAADKQRGFAR |
Parental | GLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEAN-VKCPQVVISFYEERLTWHSYPSED |
GL.PERIIGATDSSGELMFLMKWK.SDEADLV.AKEAN..KCPQ.VI.FYEERLTWHS.P... | |
Retrocopy | GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEAN>MKCPQIVIAFYEERLTWHSCPEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |