RetrogeneDB ID: | retro_tbel_4032 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_55697:915..1404(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSTBEG00000014931 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 68.24 % |
Parental protein coverage: | 91.89 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS |
MGKKQN.K....V.E.E.EE.VVEKVLDRR.V.GKVE..LKWKGF.D.DNTWEPEENLDCP.LI..FL.S | |
Retrocopy | MGKKQNGKS-KKVEEAEPEEFVVEKVLDRRIVNGKVECSLKWKGFTDADNTWEPEENLDCPELIEAFLNS |
Parental | QKTAHETDKTEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKN |
QK...E.D...G.KRK..SDSE.....S...KK.....KPRGF.RGL.PE.IIG.TDSSGELMFLMK.K. | |
Retrocopy | QKSGKEKD---GTKRKSLSDSESDDSKS---KKRDAADKPRGFSRGLDPEQIIGVTDSSGELMFLMK*KD |
Parental | SDEADLVPAKEANVKCPQVVISFYEERLTW |
SDEADLV.AKEAN.KCPQ.VI.F..ERLTW | |
Retrocopy | SDEADLVLAKEANMKCPQIVITFL*ERLTW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |