RetrogeneDB ID: | retro_tbel_2926 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_123794:1087..1425(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000014862 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSTBEG00000014931 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 60.33 % |
Parental protein coverage: | 64.86 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS |
.GKKQN.K....V.E.E.EE.VVEKVLDRRVV.GKVEY.LKWKGF.D.DNTWEPEENLDCP.LI..FL.S | |
Retrocopy | LGKKQNGKS-KKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNS |
Parental | QKTAHETDKTEGGKRKADSDSEDKGEESKPKKKK-EESEKPRGFARGLEPE |
QK...E.D...G.KRK..SDSE.....SK.KK.......K.R.....L.PE | |
Retrocopy | QKAGKEKD---GTKRKSLSDSE--SDDSKSKKRE<DAADKQRAL-QSLDPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |