RetrogeneDB ID: | retro_mmus_1300 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:93194700..93195720(-) | ||
Located in intron of: | ENSMUSG00000055421 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ldha | ||
Ensembl ID: | ENSMUSG00000063229 | ||
Aliases: | Ldha, Ldh1, Ldhm, l7R2 | ||
Description: | lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759] |
Percent Identity: | 92.98 % |
Parental protein coverage: | 94.18 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VSKDSKSKMATLKDQLIVNLLKEEQAPQNKITVVG-VGAVGMACAISILMKDLADELALVDVMEDKLKGE |
VSKDSK.KMATLKDQLIVNLLKEEQ.P.NKITVV..VGAVG.ACAISILMKDLADELALVDVM.DKLKGE | |
Retrocopy | VSKDSKYKMATLKDQLIVNLLKEEQIP*NKITVVE>VGAVGTACAISILMKDLADELALVDVMQDKLKGE |
Parental | MMDLQHGSLFLKTPKIVSSKDYCVTANSKLVIITAG-ARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPH |
MMDLQHGSLFLKTPKIVSSKDYCVTAN.KLVIITAG.ARQQ.GESRLNLVQ.NVNIFKFII.NIVKYSPH | |
Retrocopy | MMDLQHGSLFLKTPKIVSSKDYCVTANAKLVIITAG<ARQQVGESRLNLVQQNVNIFKFIIANIVKYSPH |
Parental | CKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWVLGEHGDSSVPV |
CKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYL.GE.LGVH.LSCH.WVLG..GDSSVPV | |
Retrocopy | CKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLSGESLGVHLLSCHSWVLGVYGDSSVPV |
Parental | WSGVNVAGVSLKSLNPELGTDADKEQWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRV |
WSGVNVA.VSLKSLNPELGTDADKEQWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRV | |
Retrocopy | WSGVNVASVSLKSLNPELGTDADKEQWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRV |
Parental | HPISTMIKGLYGINEDVFLSVPCILGQNGISDVVKVTLTPEEEARLKKSADTLWGIQKELQF |
HPISTMI.GLYGIN.DVFLSVPCILG.NGISDVVKVTLTPE.EARLKKSAD.LWGIQKELQF | |
Retrocopy | HPISTMITGLYGINDDVFLSVPCILGRNGISDVVKVTLTPEDEARLKKSADALWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .77 RPM | 162 .35 RPM |
SRP007412_cerebellum | 0 .43 RPM | 72 .30 RPM |
SRP007412_heart | 3 .36 RPM | 465 .65 RPM |
SRP007412_kidney | 2 .29 RPM | 344 .67 RPM |
SRP007412_liver | 2 .43 RPM | 394 .74 RPM |
SRP007412_testis | 0 .50 RPM | 722 .17 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_38109 | 915 libraries | 151 libraries | 5 libraries | 0 libraries | 1 library |