RetrogeneDB ID: | retro_mmus_2885 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:145315615..145316632(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083962 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ldha | ||
Ensembl ID: | ENSMUSG00000063229 | ||
Aliases: | Ldha, Ldh1, Ldhm, l7R2 | ||
Description: | lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759] |
Percent Identity: | 86.84 % |
Parental protein coverage: | 94.18 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VSKDSKSKMATLKDQLIVNLLKEEQAPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEM |
VSKDSKSKMATLKDQLI.NLLKEEQAPQNKITVVGVGAVGMAC.IS.L.KDL.DELALVD.MEDKLKG.M | |
Retrocopy | VSKDSKSKMATLKDQLIMNLLKEEQAPQNKITVVGVGAVGMACIISVLTKDLVDELALVDIMEDKLKGKM |
Parental | MDLQHGSLFLKTPKIVSSKDYCVTANSKLVII-TAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPHC |
M.LQHGS.FLKTPKIVSSK.YCVTAN.K...I...GARQQ.GESRL.LVQRNVNIFKFII.NI.KY.PHC | |
Retrocopy | MNLQHGSFFLKTPKIVSSKEYCVTANAK-LVI>SQGARQQKGESRLCLVQRNVNIFKFIIGNIEKYRPHC |
Parental | KLLIVSNPVDI-LTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWVLGEHGDSSVPV |
.LLIVSNPVDI.LTYVAW.ISGFPK.RVIGSGCNLDSA.FRYLMGERLG.H.LSCHGWVLGEH.D.SVPV | |
Retrocopy | ELLIVSNPVDI<LTYVAWEISGFPKSRVIGSGCNLDSAGFRYLMGERLGLHSLSCHGWVLGEHSDASVPV |
Parental | WSGVNVAGVSLKSLNPELGTDADKEQWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRV |
.SGVNV.GVSLKSLNPELGTDAD.EQWKEVH.QVVD.AYEVIKLKGYTSWAIGLSVADLAE..MKNLRRV | |
Retrocopy | *SGVNVVGVSLKSLNPELGTDADEEQWKEVHRQVVDNAYEVIKLKGYTSWAIGLSVADLAENKMKNLRRV |
Parental | HPISTMIKGLYGINEDVFLSVPCILGQNGISDVVKVTLTPEEEARLKKSADTLWGIQKELQF |
HPISTMIKGLYGIN..VFLSV.CIL.QNGIS.VVKVTLTP.EEA.LKKSADTLWGIQKELQF | |
Retrocopy | HPISTMIKGLYGINDGVFLSVSCILTQNGISGVVKVTLTPKEEAGLKKSADTLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .19 RPM | 162 .35 RPM |
SRP007412_cerebellum | 0 .04 RPM | 72 .30 RPM |
SRP007412_heart | 0 .03 RPM | 465 .65 RPM |
SRP007412_kidney | 0 .21 RPM | 344 .67 RPM |
SRP007412_liver | 0 .05 RPM | 394 .74 RPM |
SRP007412_testis | 0 .09 RPM | 722 .17 RPM |