RetrogeneDB ID: | retro_mmus_1044 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:83832314..83833336(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ldha | ||
Ensembl ID: | ENSMUSG00000063229 | ||
Aliases: | Ldha, Ldh1, Ldhm, l7R2 | ||
Description: | lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759] |
Percent Identity: | 93.27 % |
Parental protein coverage: | 94.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VSKDSKSKMATLKDQLIVNLLKEEQAP-QNKITVVG-VGAVGMACAISILMKDLADELALVDVMEDKLKG |
VSKDSKSKMATLKDQLIVNLLKEEQ.P.QNKITVV..VG...MACAISIL.KDLADELALV..ME.KLKG | |
Retrocopy | VSKDSKSKMATLKDQLIVNLLKEEQTP>QNKITVVE>VGTICMACAISILKKDLADELALVVFMENKLKG |
Parental | EMMDLQHGSLFLKTPKIVSSKDYCVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPH |
EMMDLQHGSLFLKTPKIVSSKDYCVTANSKLVIIT.GARQQEGESRLNLVQRN.NIFKFI.PNIVKYSPH | |
Retrocopy | EMMDLQHGSLFLKTPKIVSSKDYCVTANSKLVIITTGARQQEGESRLNLVQRNMNIFKFILPNIVKYSPH |
Parental | CKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWVLGEHGDSSVPV |
CKLLIVSNPV.ILTYVAWKISGFPK.RVIGSGC.LDSARFRYLMGERLGVHALSCHGWVLGEHGDSSVPV | |
Retrocopy | CKLLIVSNPVGILTYVAWKISGFPKSRVIGSGCSLDSARFRYLMGERLGVHALSCHGWVLGEHGDSSVPV |
Parental | WSGVNVAGVSLKSLNPELGTDADKEQWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRV |
WSGVNVAGVSLKSL.PEL.TD.DKEQWKEVHKQVVDSA.EVIKLKGYTSWAIGLSVADLAESIMKNLRRV | |
Retrocopy | WSGVNVAGVSLKSLTPELVTDTDKEQWKEVHKQVVDSASEVIKLKGYTSWAIGLSVADLAESIMKNLRRV |
Parental | HPISTMIKGLYGINEDVFLSVPCILGQNGISDVVKVTLTPEEEARLKKSADTLWGIQKELQF |
HPISTMIKGLYGIN.DVFLSVPCILGQNGISDVVKVTLTPEEE.RLKKSADTLWGIQKELQF | |
Retrocopy | HPISTMIKGLYGINDDVFLSVPCILGQNGISDVVKVTLTPEEETRLKKSADTLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .40 RPM | 162 .35 RPM |
SRP007412_cerebellum | 0 .22 RPM | 72 .30 RPM |
SRP007412_heart | 0 .65 RPM | 465 .65 RPM |
SRP007412_kidney | 1 .14 RPM | 344 .67 RPM |
SRP007412_liver | 1 .09 RPM | 394 .74 RPM |
SRP007412_testis | 1 .05 RPM | 722 .17 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_31334 | 402 libraries | 534 libraries | 134 libraries | 1 library | 1 library |