RetrogeneDB ID: | retro_mmus_2078 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:110209174..110209999(-) | ||
Located in intron of: | ENSMUSG00000085444 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082512 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ldha | ||
Ensembl ID: | ENSMUSG00000063229 | ||
Aliases: | Ldha, Ldh1, Ldhm, l7R2 | ||
Description: | lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759] |
Percent Identity: | 88.49 % |
Parental protein coverage: | 76.45 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KLKGEMMDLQHGSLFLKTPKIVSSKDYCVTANSKLVIITAGA-RQQEGESRLNLVQRNVNIFKFIIPNIV |
K.KGEMMDLQHGSLFLK.PKI.SSKDYCV..NSKLVI.TAGA..QQEGES.LNLVQRNVNIFKFIIPN.V | |
Retrocopy | KPKGEMMDLQHGSLFLKIPKIISSKDYCVVENSKLVI-TAGA<HQQEGES*LNLVQRNVNIFKFIIPNNV |
Parental | KYSPHCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWVLGEHGD |
KYSPHCKLL.VSNPVDILT.VA.KI.GFPK...IGSGC.LDSARF.YLMGERL.VH.LSCHGWVLGEHGD | |
Retrocopy | KYSPHCKLLVVSNPVDILTFVARKIGGFPKS*LIGSGCSLDSARFCYLMGERLRVHLLSCHGWVLGEHGD |
Parental | SSVPVWSGVNVAGVSLKSLNPELGTDADKEQWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMK |
SSVPVWSGVN.AG.SLKSLNPELG.DADKEQWK.VHKQVVDS.YEVIKLKGYTSW.IGLSVADLAESIMK | |
Retrocopy | SSVPVWSGVNIAGISLKSLNPELGIDADKEQWKDVHKQVVDSVYEVIKLKGYTSWTIGLSVADLAESIMK |
Parental | NLRRVHPISTMIKGLYGINEDVFLSVP-CILGQNGISDVVKVTLTPEEEARLKKSADTLWGIQKELQF |
NLRRVHPISTMIKGLYGIN.DVFLSVP.CILGQN.ISDVVKVTLTPEEEARLKKS.D.LWGIQKELQF | |
Retrocopy | NLRRVHPISTMIKGLYGINDDVFLSVP>CILGQNRISDVVKVTLTPEEEARLKKSEDALWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .09 RPM | 162 .35 RPM |
SRP007412_cerebellum | 0 .00 RPM | 72 .30 RPM |
SRP007412_heart | 0 .03 RPM | 465 .65 RPM |
SRP007412_kidney | 0 .06 RPM | 344 .67 RPM |
SRP007412_liver | 0 .03 RPM | 394 .74 RPM |
SRP007412_testis | 0 .05 RPM | 722 .17 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_78565 | 1030 libraries | 40 libraries | 2 libraries | 0 libraries | 0 libraries |