RetrogeneDB ID: | retro_mmus_1889 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:15397061..15397719(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082632 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ldha | ||
Ensembl ID: | ENSMUSG00000063229 | ||
Aliases: | Ldha, Ldh1, Ldhm, l7R2 | ||
Description: | lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759] |
Percent Identity: | 85.59 % |
Parental protein coverage: | 66.27 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | NVNIFKFIIPNIVKYSPHCKLLIVSNP-VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVH |
NVNIFKFIIP.IVKY.PHCKLLI.SN..VDILTYVAWKISGFPK..VIGSG.NLDSA.F.YL.G.RLGVH | |
Retrocopy | NVNIFKFIIPYIVKYRPHCKLLIISNQ<VDILTYVAWKISGFPKS*VIGSG*NLDSAQFLYLVGGRLGVH |
Parental | ALSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPELGTDADKEQWKEVHKQVVDSAYEVIKLKGYTSWA |
.LSCHGWVLGEHG.SSVP.WSGVNVAGVSLKSLNPELG.DADKEQWKE.HKQVVDSA.EVIKLK.YTSWA | |
Retrocopy | LLSCHGWVLGEHGNSSVPLWSGVNVAGVSLKSLNPELGNDADKEQWKEIHKQVVDSASEVIKLKAYTSWA |
Parental | IGLSVADLAESIMKNLRRVHPISTMIKGLYGINEDVFLSVPCILGQNGISDVVK-VTLTPEEEARLKKSA |
IGLSVADL.ESIMKNLR.VHPI.TMIK.LYGIN...FLSV.CI.GQNGI.DVVK.VTLTP.EEA.LKKSA | |
Retrocopy | IGLSVADLFESIMKNLRQVHPIPTMIKDLYGINDGIFLSVSCIQGQNGILDVVK<VTLTPDEEAGLKKSA |
Parental | DTLWGIQKELQF |
DTLWGIQKELQF | |
Retrocopy | DTLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 162 .35 RPM |
SRP007412_cerebellum | 0 .04 RPM | 72 .30 RPM |
SRP007412_heart | 0 .09 RPM | 465 .65 RPM |
SRP007412_kidney | 0 .27 RPM | 344 .67 RPM |
SRP007412_liver | 0 .08 RPM | 394 .74 RPM |
SRP007412_testis | 1 .01 RPM | 722 .17 RPM |