RetrogeneDB ID: | retro_dnov_2174 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_52878:6235..6637(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000002470 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.53 % |
Parental protein coverage: | 88.82 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | KRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVXVVRGHYKGQQIGKVVQVYRKKYV-IYIER |
K.H.N.PS.I.RKIMS.PLSKELRQK.NV.SM...KDDE..VVR..YK.QQ.GKVVQVYRK.Y..IYI.. | |
Retrocopy | KSHLNVPSLICRKIMSCPLSKELRQKCNV*SMSVCKDDEGLVVRAYYKSQQTGKVVQVYRKIYF>IYIK* |
Parental | VQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEK-NTRKKQLRRCRNKRILCT |
VQ.EKANGTTVHVGIHPS..VI..LKL.KDRKKILE.....R..GKE..N.RKKQLRRC.NKRILCT | |
Retrocopy | VQQEKANGTTVHVGIHPSTEVIPVLKLNKDRKKILEQI*TGRK-GKEQ<NVRKKQLRRCNNKRILCT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 252 .81 RPM |
SRP012922_cerebellum | 0 .00 RPM | 157 .26 RPM |
SRP012922_heart | 0 .00 RPM | 154 .53 RPM |
SRP012922_kidney | 0 .00 RPM | 395 .63 RPM |
SRP012922_liver | 0 .00 RPM | 152 .02 RPM |
SRP012922_lung | 0 .00 RPM | 419 .69 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 198 .87 RPM |
SRP012922_spleen | 0 .00 RPM | 374 .17 RPM |