RetrogeneDB ID: | retro_dnov_378 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_4238:59482..59831(-) | ||
Located in intron of: | ENSDNOG00000019948 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000002470 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.83 % |
Parental protein coverage: | 76.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MKFNPFVTSDRSKN-RKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVXVVRGHYKGQQIGK |
MKFNPFVTSDRS.N.RKR.FNAPSHI...IMSSPLSKELRQKYNV.SMPI.KDD.V.VV.GHY..QQIGK | |
Retrocopy | MKFNPFVTSDRSRN<RKRYFNAPSHIWKRIMSSPLSKELRQKYNVLSMPI*KDDAVHVVQGHYRDQQIGK |
Parental | VVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRL-KLDKDRKK |
VVQVYRKKYVIYI..V..E.ANGTT.H.GIHPSKVVIT.L.KL.KD.KK | |
Retrocopy | VVQVYRKKYVIYIKWVHWEMANGTTLHMGIHPSKVVITML<KLGKDHKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 252 .81 RPM |
SRP012922_cerebellum | 0 .00 RPM | 157 .26 RPM |
SRP012922_heart | 0 .00 RPM | 154 .53 RPM |
SRP012922_kidney | 0 .00 RPM | 395 .63 RPM |
SRP012922_liver | 0 .00 RPM | 152 .02 RPM |
SRP012922_lung | 0 .00 RPM | 419 .69 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 198 .87 RPM |
SRP012922_spleen | 0 .00 RPM | 374 .17 RPM |