RetrogeneDB ID: | retro_eeur_405 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_286171:1778..2061(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000007835 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FABP5 | ||
Ensembl ID: | ENSEEUG00000014023 | ||
Aliases: | None | ||
Description: | fatty acid binding protein 5 (psoriasis-associated) [Source:HGNC Symbol;Acc:3560] |
Percent Identity: | 90.53 % |
Parental protein coverage: | 69.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DCIISSDGKNLTIKTESTLKTTQFSCNLGEKFEETTADGRKTQ-TVCNLTNGELIQHQEWDGKESTITRK |
DCIISSDGKNLTIK.ESTLKTTQ..CNLGEKFEETTADGRKT..TVCNLTNGEL.QHQEWD.KESTITRK | |
Retrocopy | DCIISSDGKNLTIKIESTLKTTQLLCNLGEKFEETTADGRKTE>TVCNLTNGELTQHQEWDRKESTITRK |
Parental | IENGKLVVECVMNNVTCTRVYEKVE |
IENGKLVV.CVMNNVTCT.VYEKVE | |
Retrocopy | IENGKLVVKCVMNNVTCTCVYEKVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 60 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 36 .01 RPM |
SRP017611_liver | 0 .00 RPM | 0 .96 RPM |