RetrogeneDB ID: | retro_mmul_1417 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:18561151..18561394(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2121 | ||
Ensembl ID: | ENSMMUG00000000486 | ||
Aliases: | None | ||
Description: | fatty acid-binding protein, epidermal [Source:RefSeq peptide;Acc:NP_001247718] |
Percent Identity: | 93.83 % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KTESTLKTTQFSCTLGEKFEETTADGRKTQTVCSFTDGALVQHQEWDGKESTITRKLKDGKLVVDCVMNN |
KTESTLKTT.FSCTLGEKFEETTADGRKTQTVC.FTDGALVQHQEWDGKESTITRKLKDGKLVVDCVMNN | |
Retrocopy | KTESTLKTTHFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVDCVMNN |
Parental | VTCTRIYEKVE |
V..T.IYEKVE | |
Retrocopy | VSYTQIYEKVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 8 .85 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 10 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 7 .17 RPM |
SRP007412_heart | 0 .00 RPM | 44 .69 RPM |
SRP007412_kidney | 0 .00 RPM | 4 .46 RPM |
SRP007412_liver | 0 .00 RPM | 2 .10 RPM |
SRP007412_testis | 0 .00 RPM | 10 .29 RPM |