RetrogeneDB ID: | retro_mmus_3185 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 8:34307287..34307687(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000095202 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fabp5 | ||
Ensembl ID: | ENSMUSG00000027533 | ||
Aliases: | Fabp5, E-FABP, Fabpe, Klbp, PA-FABP, mal1 | ||
Description: | fatty acid binding protein 5, epidermal [Source:MGI Symbol;Acc:MGI:101790] |
Percent Identity: | 88.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MASLKDLEGKWRLMESHGFEEYMKELGVGLALRKMAAMAKPDCIITCDGNNITVKTESTVKTTVFSCNLG |
MASLKDLEGKWRLMESHGFEEY.KELGVGLALRKMAAMAKPD.IITCDGNNIT.KTESTVKTTVFSC.LG | |
Retrocopy | MASLKDLEGKWRLMESHGFEEYAKELGVGLALRKMAAMAKPDSIITCDGNNITIKTESTVKTTVFSCTLG |
Parental | EKFDETTADGRKTETVCTFQDGALVQHQQWDGKESTITRK-LKDGKMIVECVMNNATCTRVYEKVQ |
EKFDET.ADGRKTE.VCTFQDGALVQHQQW.G......RK.LKDGK.IVE.VMNNATCTRVYEKVQ | |
Retrocopy | EKFDETMADGRKTEMVCTFQDGALVQHQQWEGEHD--NRK>LKDGKLIVERVMNNATCTRVYEKVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 38 .01 RPM |
SRP007412_cerebellum | 0 .00 RPM | 22 .10 RPM |
SRP007412_heart | 0 .00 RPM | 21 .95 RPM |
SRP007412_kidney | 0 .00 RPM | 7 .80 RPM |
SRP007412_liver | 0 .00 RPM | 16 .77 RPM |
SRP007412_testis | 0 .00 RPM | 3 .20 RPM |