RetrogeneDB ID: | retro_dnov_1073 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_143665:21..421(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FABP5 | ||
Ensembl ID: | ENSDNOG00000018066 | ||
Aliases: | None | ||
Description: | fatty acid binding protein 5 (psoriasis-associated) [Source:HGNC Symbol;Acc:3560] |
Percent Identity: | 65.93 % |
Parental protein coverage: | 99.26 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MATIQELAGRWRLIESKGFDEYMKEVGVGMALRKMGAMAKPDCIITTDGKALTVKTESTLKTSQFSCNLG |
...IQ.LAGRW.L.ESKGFDEY.KE.GVGMALRK.GA.A.PDC..T.D.K.LT.KT.S.LKT.QF..NL. | |
Retrocopy | VTAIQQLAGRWHLVESKGFDEYTKEAGVGMALRKTGATATPDCVFTFDNKSLTIKTKSILKT*QF-FNLV |
Parental | EKFEETTADGRKTQTLCTFKDGTLLQHQEWDGKESTITRKVEN-GKLIVDCVMNNVTCTRIYEKV |
EKF.ET.A..RKTQ.LCTF.D..L.Q.....G.ESTITRKVE..GKL.V.C.MNNVT.T..YEKV | |
Retrocopy | EKFDETIALSRKTQSLCTFTDRALIQY*QQGGEESTITRKVED>GKLVVVCIMNNVTSTLVYEKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 176 .38 RPM |
SRP012922_cerebellum | 0 .00 RPM | 24 .61 RPM |
SRP012922_heart | 0 .00 RPM | 227 .62 RPM |
SRP012922_kidney | 0 .00 RPM | 7 .12 RPM |
SRP012922_liver | 0 .00 RPM | 4 .64 RPM |
SRP012922_lung | 0 .00 RPM | 149 .52 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 73 .39 RPM |
SRP012922_spleen | 0 .00 RPM | 198 .25 RPM |