RetrogeneDB ID: | retro_cjac_2227 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 3:33137293..33137613(-) | ||
Located in intron of: | ENSCJAG00000001403 | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000032624 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FABP5 | ||
Ensembl ID: | ENSCJAG00000000444 | ||
Aliases: | None | ||
Description: | fatty acid binding protein 5 (psoriasis-associated) [Source:HGNC Symbol;Acc:3560] |
Percent Identity: | 71.82 % |
Parental protein coverage: | 81.34 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GVGIALRKMGAMAKPDC-IITCDGKNLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALV |
G..IALRKMG..AKP...II.CDGKNLTIKTE.......FS..LGEKFEET.A..RKTQTVCN..DGALV | |
Retrocopy | GMRIALRKMGTTAKPEL<IIICDGKNLTIKTEHLDNSRVFS--LGEKFEETIAHDRKTQTVCNLADGALV |
Parental | QHQEWDGKESTITRKLKDGKLVVDCVINNVTCTRIYEKVE |
QHQEWDGK..TITRKLKD...VV.CV.NNVTC.RIY.KVE | |
Retrocopy | QHQEWDGKKRTITRKLKDRTFVVVCVMNNVTCSRIYKKVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .07 RPM | 4 .68 RPM |
SRP051959_heart | 0 .12 RPM | 17 .70 RPM |
SRP051959_kidney | 0 .00 RPM | 1 .15 RPM |
SRP051959_liver | 0 .00 RPM | 0 .95 RPM |
SRP051959_lung | 0 .07 RPM | 17 .50 RPM |
SRP051959_lymph_node | 0 .00 RPM | 7 .28 RPM |
SRP051959_skeletal_muscle | 0 .02 RPM | 7 .23 RPM |
SRP051959_spleen | 0 .00 RPM | 12 .02 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3000 |
Pan troglodytes | retro_ptro_2029 |
Gorilla gorilla | retro_ggor_2079 |
Macaca mulatta | retro_mmul_1920 |