RetrogeneDB ID: | retro_rnor_1997 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:173844610..173845001(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fabp5 | ||
Ensembl ID: | ENSRNOG00000049075 | ||
Aliases: | Fabp5, C-FABP, DA11, E-FABP | ||
Description: | Fatty acid-binding protein, epidermal [Source:UniProtKB/Swiss-Prot;Acc:P55053] |
Percent Identity: | 82.22 % |
Parental protein coverage: | 98.52 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MASLKDLEGKWRLVESHG-FEDYMKELGVGLALRKMGAMAKPDCIITLDGNNLTVKTESTVKTTVFSCTL |
.ASLKDL.GKWRLVESH..FEDYMKELGV.LALRKMGAMAKPDCIIT.DGNN.TVKTESTV.TTVFS.TL | |
Retrocopy | IASLKDLKGKWRLVESHA<FEDYMKELGVDLALRKMGAMAKPDCIITCDGNNITVKTESTV*TTVFSYTL |
Parental | GEKFDETTADGRKTETVCTFTDGALVQHQKWEGK-ESTITRKLKDGKMVVECVMNNAICTRVYEK |
GEKF.E.TADG.KTE.V.TF..GALVQHQK..GK.ESTITRKLKD.KMVVECVM.NAICTR.Y.. | |
Retrocopy | GEKFNENTADGWKTEMVYTFAVGALVQHQK--GK<ESTITRKLKDRKMVVECVMINAICTRRYNE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 35 .88 RPM |
SRP017611_kidney | 0 .00 RPM | 27 .77 RPM |
SRP017611_liver | 0 .00 RPM | 9 .14 RPM |