RetrogeneDB ID:

retro_mmul_2230

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:7:63487048..63487450(-)
Located in intron of:ENSMMUG00000011019
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MMU.2121
Ensembl ID:ENSMMUG00000000486
Aliases:None
Description:fatty acid-binding protein, epidermal [Source:RefSeq peptide;Acc:NP_001247718]


Retrocopy-Parental alignment summary:






>retro_mmul_2230
GCCACAGTTCAGCAGCTGGAAGGAAGATGGCGCCTGGTGGACAGCAAAGGCTTTGATGAATACATGAAGGAGTTAGGAGT
GGGAATTGCTTTGCACAAAATGGGCGCAATGGCCAAGCCAGATTGTATCATCACTTGTTATGGCGAAAACCTCACTATAA
AAACTGACAGCACTTTGAAAACAACACAGTTTTCTTGTACCCTGGGAAGGAAGTTTGAAGAAACCACAGCTGATGGCAGA
AAAACTCAGACTGTCTGCAACTTTACAGATGGTGCATTGGTTCTGCATCAGGAGCGTGATGGGAAGGAAAGCACAATAAC
AGGAAAATTGAAAGATGGGAAATTAGTGGTGGACTGTGTCATGAACAATGTCACCTGTACTAGGATCTATGAAAAAGTAG
AA

ORF - retro_mmul_2230 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 93.28 %
Parental protein coverage: 99.26 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTLKTTQFSCTLGE
ATVQQLEGRWRLVDSKGFDEYMKELGVGIAL.KMGAMAKPDCIITC.G.NLTIKT.STLKTTQFSCTLG.
RetrocopyATVQQLEGRWRLVDSKGFDEYMKELGVGIALHKMGAMAKPDCIITCYGENLTIKTDSTLKTTQFSCTLGR
ParentalKFEETTADGRKTQTVCSFTDGALVQHQEWDGKESTITRKLKDGKLVVDCVMNNVTCTRIYEKVE
KFEETTADGRKTQTVC.FTDGALV.HQE.DGKESTIT.KLKDGKLVVDCVMNNVTCTRIYEKVE
RetrocopyKFEETTADGRKTQTVCNFTDGALVLHQERDGKESTITGKLKDGKLVVDCVMNNVTCTRIYEKVE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 8 .85 RPM
SRP007412_brain_prefrontal_cortex 0 .08 RPM 10 .23 RPM
SRP007412_cerebellum 0 .00 RPM 7 .17 RPM
SRP007412_heart 0 .06 RPM 44 .69 RPM
SRP007412_kidney 0 .00 RPM 4 .46 RPM
SRP007412_liver 0 .00 RPM 2 .10 RPM
SRP007412_testis 0 .00 RPM 10 .29 RPM
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_2230 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_2230 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_2230 has 3 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_1520
Pan troglodytes retro_ptro_1029
Gorilla gorilla retro_ggor_1163

Parental genes homology:
Parental genes homology involve 31 parental genes, and 117 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000146191 retrocopy
Bos taurus ENSBTAG000000473303 retrocopies
Callithrix jacchus ENSCJAG000000004444 retrocopies
Cavia porcellus ENSCPOG000000257321 retrocopy
Dasypus novemcinctus ENSDNOG000000180665 retrocopies
Equus caballus ENSECAG000000082702 retrocopies
Erinaceus europaeus ENSEEUG000000140232 retrocopies
Echinops telfairi ENSETEG0000000744314 retrocopies
Felis catus ENSFCAG000000060322 retrocopies
Homo sapiens ENSG0000016468712 retrocopies
Gorilla gorilla ENSGGOG000000059648 retrocopies
Latimeria chalumnae ENSLACG000000085113 retrocopies
Macropus eugenii ENSMEUG000000021361 retrocopy
Microcebus murinus ENSMICG000000013112 retrocopies
Myotis lucifugus ENSMLUG000000095143 retrocopies
Macaca mulatta ENSMMUG00000000486 4 retrocopies
Macaca mulatta ENSMMUG000000022951 retrocopy
Macaca mulatta ENSMMUG000000109061 retrocopy
Macaca mulatta ENSMMUG000000193371 retrocopy
Macaca mulatta ENSMMUG000000219071 retrocopy
Mus musculus ENSMUSG000000275334 retrocopies
Otolemur garnettii ENSOGAG0000000241310 retrocopies
Oryzias latipes ENSORLG000000082821 retrocopy
Pongo abelii ENSPPYG000000186991 retrocopy
Pan troglodytes ENSPTRG0000002037312 retrocopies
Pteropus vampyrus ENSPVAG000000178505 retrocopies
Rattus norvegicus ENSRNOG000000490753 retrocopies
Sus scrofa ENSSSCG000000061531 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000078773 retrocopies
Tarsius syrichta ENSTSYG000000014725 retrocopies
Tursiops truncatus ENSTTRG000000053771 retrocopy



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