RetrogeneDB ID: | retro_fcat_1834 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F2:5903469..5903804(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FABP5 | ||
Ensembl ID: | ENSFCAG00000006032 | ||
Aliases: | None | ||
Description: | fatty acid binding protein 5 (psoriasis-associated) [Source:HGNC Symbol;Acc:3560] |
Percent Identity: | 64.91 % |
Parental protein coverage: | 83.7 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MKEVGVGMALRKVGAMAKPDCIISSDGKNLTIKTESTLKTTQF-SCNLGEKFEETTADGRKTQTVCTFTN |
..EVG.GMAL..VG.MAKPDCI.SSDG.NLT..TEST.....F.SCNLGE.F.ETTADGR.TQ.VC.F.. | |
Retrocopy | LEEVGAGMAL*EVGVMAKPDCIVSSDGDNLTTETEST-ENSSF<SCNLGERFKETTADGRQTQRVCIFLR |
Parental | GALVQHQEWDGKESTITRKLEDGKLVVECVMNNVTCTRVYEKVE |
GALV..QEW...ES...RK.EDGKL..EC..NNVT.T..YEK.E | |
Retrocopy | GALV*YQEWVEEESVVPRKWEDGKLGPECATNNVTSTLLYEKGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 3 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 54 .21 RPM |
SRP017611_liver | 0 .00 RPM | 9 .10 RPM |