RetrogeneDB ID:

retro_pvam_89

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_1299:132099..132314(+)
Located in intron of:ENSPVAG00000005691
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FABP5
Ensembl ID:ENSPVAG00000017850
Aliases:None
Description:fatty acid binding protein 5 (psoriasis-associated) [Source:HGNC Symbol;Acc:3560]


Retrocopy-Parental alignment summary:






>retro_pvam_89
CAGTTTTCGTGTAACCTGGGAGAGAAATGTGAAGAAACTACAGATGATGGCAGAAAAATTCAGACTGTCTGTAACTTTAT
AAAGGTACATTAGGTCAACATCAGGAATGGGATGGGAAGGAAAGCACAGTAATGAGAAAATTGGAAGATGGGAAATTAAT
GGTGGAATGTGTCATGAACAATGTCACCTGTACTTGGGTCTATAATAATGTAGAG

ORF - retro_pvam_89 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.97 %
Parental protein coverage: 53.33 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalQFSCKLGEKFEETTADGRKTQTVCSFVN-GALVQHQEWDGKESTITRKLEDGKMVVECVMNDVTCTRIYE
QFSC.LGEK.EETT.DGRK.QTVC.F...G.L.QHQEWDGKEST..RKLEDGK..VECVMN.VTCT..Y.
RetrocopyQFSCNLGEKCEETTDDGRKIQTVCNFIK<GTLGQHQEWDGKESTVMRKLEDGKLMVECVMNNVTCTWVYN
ParentalKVE
.VE
RetrocopyNVE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_89 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 27 parental genes, and 113 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000146191 retrocopy
Bos taurus ENSBTAG000000473303 retrocopies
Callithrix jacchus ENSCJAG000000004444 retrocopies
Cavia porcellus ENSCPOG000000257321 retrocopy
Dasypus novemcinctus ENSDNOG000000180665 retrocopies
Equus caballus ENSECAG000000082702 retrocopies
Erinaceus europaeus ENSEEUG000000140232 retrocopies
Echinops telfairi ENSETEG0000000744314 retrocopies
Felis catus ENSFCAG000000060322 retrocopies
Homo sapiens ENSG0000016468712 retrocopies
Gorilla gorilla ENSGGOG000000059648 retrocopies
Latimeria chalumnae ENSLACG000000085113 retrocopies
Macropus eugenii ENSMEUG000000021361 retrocopy
Microcebus murinus ENSMICG000000013112 retrocopies
Myotis lucifugus ENSMLUG000000095143 retrocopies
Macaca mulatta ENSMMUG000000004864 retrocopies
Mus musculus ENSMUSG000000275334 retrocopies
Otolemur garnettii ENSOGAG0000000241310 retrocopies
Oryzias latipes ENSORLG000000082821 retrocopy
Pongo abelii ENSPPYG000000186991 retrocopy
Pan troglodytes ENSPTRG0000002037312 retrocopies
Pteropus vampyrus ENSPVAG00000017850 5 retrocopies
Rattus norvegicus ENSRNOG000000490753 retrocopies
Sus scrofa ENSSSCG000000061531 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000078773 retrocopies
Tarsius syrichta ENSTSYG000000014725 retrocopies
Tursiops truncatus ENSTTRG000000053771 retrocopy



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