RetrogeneDB ID: | retro_ptro_1029 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 15:80607063..80607464(+) | ||
Located in intron of: | ENSPTRG00000007389 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FABP5 | ||
Ensembl ID: | ENSPTRG00000020373 | ||
Aliases: | FABP5, FABP5L2, FABP5L7 | ||
Description: | fatty acid binding protein 5 (psoriasis-associated) [Source:HGNC Symbol;Acc:3560] |
Percent Identity: | 91.18 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MATVQQLEGRWRLVDSKGFDEYMKEL-GVGIALRKMGAMAKPDCIITCDGKNLTIKTESTLKTTQFSCTL |
MATVQQL.GRWRLVDSK.FDEYMKE..GVG.ALRKM.AMAKPDCIITCDGKNLTIKTESTLK.TQFSCTL | |
Retrocopy | MATVQQLGGRWRLVDSKRFDEYMKEE<GVGTALRKMDAMAKPDCIITCDGKNLTIKTESTLK-TQFSCTL |
Parental | GEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVECVMNNVTCTRIYEKVE |
GEKFEETTADGRKTQTVC.F.DGALVQHQEWDGKE.TITRKLKDGKLVV.CVMNNV.CTRIYEKVE | |
Retrocopy | GEKFEETTADGRKTQTVCSFADGALVQHQEWDGKENTITRKLKDGKLVVYCVMNNVACTRIYEKVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 16 .25 RPM |
SRP007412_cerebellum | 0 .04 RPM | 8 .64 RPM |
SRP007412_heart | 0 .00 RPM | 19 .18 RPM |
SRP007412_kidney | 0 .03 RPM | 0 .76 RPM |
SRP007412_liver | 0 .03 RPM | 1 .18 RPM |
SRP007412_testis | 0 .00 RPM | 20 .87 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1520 |
Gorilla gorilla | retro_ggor_1163 |
Macaca mulatta | retro_mmul_2230 |