RetrogeneDB ID: | retro_etel_1276 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_23929:1653..2058(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000010039 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FABP5 | ||
Ensembl ID: | ENSETEG00000007443 | ||
Aliases: | None | ||
Description: | fatty acid binding protein 5 (psoriasis-associated) [Source:HGNC Symbol;Acc:3560] |
Percent Identity: | 71.53 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MATLEQFVGRWRLVDSKGFDEYMKELGVGMALRK-MGAMAKPDCIITCDGKTLTVKTESTLKTTQFSCNL |
.AT..Q..GRW...DSKGFD..MKELGVGMAL.K.MGAM..PD..I...GK.LTVKTESTLKTTQFSC.L | |
Retrocopy | VATIQQLLGRWHPLDSKGFDANMKELGVGMALGK<MGAMTRPDWVISTGGKILTVKTESTLKTTQFSCHL |
Parental | GEKFEETTADGRKTQTVCDFADGALVQHQDWDGKQSTI-TRKLENGKLVVECVMNNVTCTRTYEKVE |
GEK.EET.AD.RKTQTVC....G..VQHQ..DGK.STI.TRKLE..KLVVECVMNNVTCT..YEK.E | |
Retrocopy | GEKLEETIADSRKTQTVCNLTEGL*VQHQEQDGKESTI>TRKLEDRKLVVECVMNNVTCTQSYEKAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |