Parental gene:

FABP5, ENSCJAG00000000444

Aliases:None
Description:fatty acid binding protein 5 (psoriasis-associated) [Source:HGNC Symbol;Acc:3560]
Organism:Marmoset (Callithrix jacchus)
Coordinates:16:33357304..33361848(+)


>ENSCJAG00000000444
ATGGCCACAGTTCAGCAGCTGGAAGGAAGATGGCGCCTGGTGGACAGCAAGGGAGATGATACATATTATGAACTGGGAGT
GGGAATAGCTTTGAGAAAAATGGGCGCAATGGCCAAGCCAGACTGTATCATTACTTGTGATGGCAAAAACCTCACCATAA
AAACTGAGAGCACTTTGAAAACAACACAGTTTTCTTGTACCCTGGGAGAGAAATTTGAAGAAACTACAGCTGATGGCAGA
AAAACTCAGACTGTCTGCAACTTTACAGATGGTGCATTGGTTCAGCATCAGGAGTGGGATGGGAAGGAAAGCACAATAAC
AAGAAAATTGAAAGATGGGAAATTAGTGGTGGACTGTGTCATAAACAATGTCACCTGTACTCGGATCTATGAAAAAGTAG
AATAA

Library Parental gene expression (RPM)
SRP051959_colon 4 .68 RPM
SRP051959_heart 17 .70 RPM
SRP051959_kidney 1 .15 RPM
SRP051959_liver 0 .95 RPM
SRP051959_lung 17 .50 RPM
SRP051959_lymph_node 7 .28 RPM
SRP051959_skeletal_muscle 7 .23 RPM
SRP051959_spleen 12 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014619 ortholog_one2many 1 retrogene
retro_amel_1139,
Bos taurus ENSBTAG00000047330 ortholog_one2one 3 retrogenes
retro_btau_1312, retro_btau_1828, retro_btau_886,
Callithrix jacchus ENSCJAG00000000433 within_species_paralog 1 retrogene
retro_cjac_2486,
Cavia porcellus ENSCPOG00000025732 ortholog_one2one 1 retrogene
retro_cpor_948,
Dasypus novemcinctus ENSDNOG00000018066 ortholog_one2one 5 retrogenes
retro_dnov_1073, retro_dnov_1231, retro_dnov_1318, retro_dnov_2392, retro_dnov_559,
Equus caballus ENSECAG00000008270 ortholog_one2one 2 retrogenes
retro_ecab_894, retro_ecab_938,
Erinaceus europaeus ENSEEUG00000014023 ortholog_one2one 2 retrogenes
retro_eeur_405, retro_eeur_627,
Echinops telfairi ENSETEG00000007443 ortholog_one2one 14 retrogenes
retro_etel_1024, retro_etel_1241, retro_etel_1276, retro_etel_1405, retro_etel_1467, retro_etel_1706, retro_etel_1842, retro_etel_1904, retro_etel_2003, retro_etel_512, retro_etel_602, retro_etel_620, retro_etel_806, retro_etel_994,
Felis catus ENSFCAG00000006032 ortholog_one2one 2 retrogenes
retro_fcat_1243, retro_fcat_1834,
Homo sapiens ENSG00000164687 ortholog_one2one 12 retrogenes
retro_hsap_1205, retro_hsap_1279, retro_hsap_1520, retro_hsap_1521, retro_hsap_2167, retro_hsap_2568, retro_hsap_3000, retro_hsap_3357, retro_hsap_3376, retro_hsap_3811, retro_hsap_4717, retro_hsap_880,
Gorilla gorilla ENSGGOG00000005964 ortholog_one2one 8 retrogenes
retro_ggor_1005, retro_ggor_1163, retro_ggor_2079, retro_ggor_2276, retro_ggor_2284, retro_ggor_2563, retro_ggor_2931, retro_ggor_940,
Latimeria chalumnae ENSLACG00000008511 ortholog_many2many 3 retrogenes
retro_lcha_37, retro_lcha_45, retro_lcha_57,
Macropus eugenii ENSMEUG00000002136 ortholog_one2one 1 retrogene
retro_meug_1874,
Microcebus murinus ENSMICG00000001311 ortholog_one2one 2 retrogenes
retro_mmur_137, retro_mmur_702,
Myotis lucifugus ENSMLUG00000009514 ortholog_one2one 3 retrogenes
retro_mluc_1590, retro_mluc_1920, retro_mluc_501,
Macaca mulatta ENSMMUG00000000486 ortholog_one2many 4 retrogenes
retro_mmul_1417, retro_mmul_1920, retro_mmul_2095, retro_mmul_2230,
Mus musculus ENSMUSG00000027533 ortholog_one2one 4 retrogenes
retro_mmus_1685, retro_mmus_1791, retro_mmus_2084, retro_mmus_3185,
Otolemur garnettii ENSOGAG00000002413 ortholog_one2one 10 retrogenes
retro_ogar_1024, retro_ogar_1151, retro_ogar_1286, retro_ogar_1676, retro_ogar_2873, retro_ogar_3066, retro_ogar_3099, retro_ogar_3265, retro_ogar_715, retro_ogar_878,
Oryzias latipes ENSORLG00000008282 ortholog_many2many 1 retrogene
retro_olat_7,
Pongo abelii ENSPPYG00000018699 ortholog_one2many 1 retrogene
retro_pabe_27,
Pan troglodytes ENSPTRG00000020373 ortholog_one2one 12 retrogenes
retro_ptro_1029, retro_ptro_1030, retro_ptro_1498, retro_ptro_1654, retro_ptro_2029, retro_ptro_2131, retro_ptro_2265, retro_ptro_2295, retro_ptro_2664, retro_ptro_3135, retro_ptro_823, retro_ptro_875,
Pteropus vampyrus ENSPVAG00000017850 ortholog_one2one 5 retrogenes
retro_pvam_1159, retro_pvam_467, retro_pvam_531, retro_pvam_852, retro_pvam_89,
Rattus norvegicus ENSRNOG00000049075 ortholog_one2one 3 retrogenes
retro_rnor_1762, retro_rnor_1879, retro_rnor_1997,
Sus scrofa ENSSSCG00000006153 ortholog_one2one 1 retrogene
retro_sscr_476,
Ictidomys tridecemlineatus ENSSTOG00000007877 ortholog_one2many 3 retrogenes
retro_itri_1305, retro_itri_389, retro_itri_72,
Tarsius syrichta ENSTSYG00000001472 ortholog_one2one 5 retrogenes
retro_tsyr_126, retro_tsyr_1534, retro_tsyr_1894, retro_tsyr_1982, retro_tsyr_2024,
Tursiops truncatus ENSTTRG00000005377 ortholog_one2one 1 retrogene
retro_ttru_1800,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1832 75.68 53.73
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2. retro_cjac_2227 71.82 81.34
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3. retro_cjac_2816 85.58 76.87
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4. retro_cjac_4084 59.15 52.99
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Download FASTA sequences of all ENSCJAG00000000444 retrocopies