RetrogeneDB ID: | retro_ggor_627 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 11:14604664..14605072(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000177350 | ||
Ensembl ID: | ENSGGOG00000002932 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.5 % |
Parental protein coverage: | 67. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAY |
R.PYHF.APS.IFW.T.RGMLPHKTKRG.AALD.LKVFD.IPPP..KKKRMVVPAAL.VVRLKPT.KFAY | |
Retrocopy | RPPYHFQAPSSIFWQTLRGMLPHKTKRGHAALDCLKVFDSIPPP*EKKKRMVVPAALRVVRLKPTKKFAY |
Parental | LGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGLLV |
LGRLAHEVGWKYQAVTATLEEKRKEKAKIHY.KKKQL.RL.K.AEKNVEKKIDKYTEVL.THGLLV | |
Retrocopy | LGRLAHEVGWKYQAVTATLEEKRKEKAKIHYWKKKQLTRLQKLAEKNVEKKIDKYTEVLQTHGLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .10 RPM | 202 .37 RPM |
SRP007412_cerebellum | 0 .04 RPM | 267 .43 RPM |
SRP007412_heart | 0 .00 RPM | 188 .53 RPM |
SRP007412_kidney | 0 .00 RPM | 447 .28 RPM |
SRP007412_liver | 0 .00 RPM | 505 .64 RPM |
SRP007412_testis | 0 .10 RPM | 207 .51 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_753 |
Macaca mulatta | retro_mmul_1100 |