RetrogeneDB ID: | retro_cpor_888 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_32:3597638..3597950(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSCPOG00000012417 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 57.27 % |
Parental protein coverage: | 52.94 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | QAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGR-LAHEVGWKYQAVTATLEEKRKEKA |
Q..LDRL.VFD...PPYDKKK..VV..A..V..L.P...FA.LG..L.HEV..KY.AVTA.LEEKR..K. | |
Retrocopy | QITLDRLTVFDKTLPPYDKKK*AVVSVAFEVEHLNPRTRFASLGA>LVHEVSRKYWAVTAILEEKRR-KT |
Parental | KIHYRKK-KQIMRLRKQAEKNVEKKIGKFTEVLKTHGLLV |
KI.Y.KK.K.I.RL..QAEKN.E.K..KF....KTH..L. | |
Retrocopy | KIYYQKK<KNITRLQEQAEKNAEEKTTKF---FKTHRFLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 128 .66 RPM |
SRP017611_kidney | 0 .10 RPM | 217 .85 RPM |
SRP017611_liver | 0 .00 RPM | 158 .83 RPM |
SRP040447_lung | 0 .00 RPM | 502 .00 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 485 .46 RPM |