RetrogeneDB ID: | retro_ttru_1304 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_110003:19486..19999(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSTTRG00000005485 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:HGNC Symbol;Acc:10304] |
Percent Identity: | 90.7 % |
Parental protein coverage: | 84.73 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRA |
VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFL.KRMNTNPSRGPYHFRA | |
Retrocopy | VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLCKRMNTNPSRGPYHFRA |
Parental | PSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEV |
PSRIFWRTV.GMLP.K.K.GQAALD..KVFDGIPPPYDK.K.MVVPA.LKVVRLKPTRKFAYLG.LAHE. | |
Retrocopy | PSRIFWRTVQGMLPLKIK*GQAALDCPKVFDGIPPPYDKEKWMVVPATLKVVRLKPTRKFAYLGCLAHEA |
Parental | GWKYQAVTATLEEKRKEKAKIHYRKKKQLMRL |
GWKYQ.V.ATL.EKRKEKAKIH.RKKKQLMRL | |
Retrocopy | GWKYQVVMATL-EKRKEKAKIH*RKKKQLMRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |