RetrogeneDB ID: | retro_fcat_1197 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:84895475..84895984(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSFCAG00000009194 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:HGNC Symbol;Acc:10304] |
Percent Identity: | 77.46 % |
Parental protein coverage: | 86. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | RKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAP-SRIFWRTVRGMLPHKTKRGQAAL |
RKVVVV.CEGI.ISG..YRNKLKYLAFL.K.MNT.PS.GPY.FR.P.S.IF.R.V.GMLPHKTK.G..AL | |
Retrocopy | RKVVVVCCEGIIISGDSYRNKLKYLAFLCKQMNTSPSHGPYTFRGP<SHIFGRMV*GMLPHKTKGG*SAL |
Parental | DRLKVFDGIPPPYDKEKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYR |
DRLKV..GIPPPYDK.K.MVVP.ALKVV.LKPT..FAYLG.LAHEVGW.Y.AVT.TLEEK.KEKAKIHY. | |
Retrocopy | DRLKVCVGIPPPYDKKKWMVVP-ALKVVHLKPTQ*FAYLGHLAHEVGWIYKAVTVTLEEK-KEKAKIHYQ |
Parental | KKKQLVRLRKQAEKNVEGKINKYTEVLKTHGLL |
KKKQL.RL.KQA.KNVE.KINKYTE.LK.H.LL | |
Retrocopy | KKKQLMRLWKQAKKNVEKKINKYTEALKIHELL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 53 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 214 .88 RPM |
SRP017611_liver | 0 .00 RPM | 93 .20 RPM |