RetrogeneDB ID: | retro_pcap_416 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_7796:15838..16176(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSPCAG00000004086 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:HGNC Symbol;Acc:10304] |
Percent Identity: | 84.21 % |
Parental protein coverage: | 55.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KTKRGQ-AALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEK |
.T.RG..A.LD.LK.F.GIPP..D.KKRMVVPA.LKVV.LKPT.KFAYLGRLAHEV..KYQAVTATLEEK | |
Retrocopy | RTVRGM<ATLDHLKGFHGIPPHDDNKKRMVVPATLKVVSLKPTQKFAYLGRLAHEVDCKYQAVTATLEEK |
Parental | RKEKAKLHYRKKKQLMRLRKQAEKNLEKKIDKYTEVLKTYGLLV |
RKEKAKLHYRKKK.LMRLRKQAEKNLE.KIDKYTEVLKTYGLLV | |
Retrocopy | RKEKAKLHYRKKKPLMRLRKQAEKNLERKIDKYTEVLKTYGLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005296 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000029892 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000000072 | 16 retrocopies | |
Echinops telfairi | ENSETEG00000017076 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000002932 | 11 retrocopies | |
Loxodonta africana | ENSLAFG00000016213 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000007551 | 14 retrocopies | |
Mustela putorius furo | ENSMPUG00000002604 | 3 retrocopies | |
Mus musculus | ENSMUSG00000074129 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000025258 | 9 retrocopies | |
Otolemur garnettii | ENSOGAG00000004625 | 7 retrocopies | |
Procavia capensis | ENSPCAG00000004086 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000010251 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011298 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010958 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000020618 | 10 retrocopies | |
Sus scrofa | ENSSSCG00000003166 | 4 retrocopies |