RetrogeneDB ID: | retro_fcat_548 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:98354936..98355305(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSFCAG00000009194 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:HGNC Symbol;Acc:10304] |
Percent Identity: | 53.66 % |
Parental protein coverage: | 61. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GRGLQIGTFFSCLAVNLSTSRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIF |
G.G...G......A........V.V...EGINI.GNFYRNKLKYL.FL.K.MN.NP...PYHFR.PS..F | |
Retrocopy | GQGHLLGHPAAIMAKQVLLGQEVIVMGYEGINIYGNFYRNKLKYLTFLHKWMNINPFCSPYHFRMPS*TF |
Parental | WRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKEKRMV-VPAALKVVRLKPT |
.R..R.MLPH.TK.GQA.L..LKVFDGI.P.YDK....V..P..L.V..L..T | |
Retrocopy | VRQRRNMLPHETKGGQAMLHHLKVFDGILPSYDKKRWWVLLPSKLCVQNLHQT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 53 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 214 .88 RPM |
SRP017611_liver | 0 .00 RPM | 93 .20 RPM |