RetrogeneDB ID: | retro_eeur_168 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_135403:367..808(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSEEUG00000014071 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:HGNC Symbol;Acc:10304] |
Percent Identity: | 89.12 % |
Parental protein coverage: | 72.41 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | KYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPA |
KYLAFL.KRMN.NPSRGPYHF.APSR.FW.T.RG.LPHKTK.GQAALDRLKVFD.IPPPYDKKK.MVVPA | |
Retrocopy | KYLAFLCKRMNINPSRGPYHF*APSRVFWSTLRGILPHKTK*GQAALDRLKVFDCIPPPYDKKKWMVVPA |
Parental | ALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRRKKQLMRLRKQAEKNAEKKICKF |
A.KVVRLK.TRKFAYL.RLAHEV..KYQAVTAT.EEKRKEKAKMHYRRKKQLMRLRKQAEKNAEKKICKF | |
Retrocopy | ARKVVRLKTTRKFAYLERLAHEVS*KYQAVTATVEEKRKEKAKMHYRRKKQLMRLRKQAEKNAEKKICKF |
Parental | TEVLKTH |
TEVLKTH | |
Retrocopy | TEVLKTH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 88 .15 RPM |
SRP017611_kidney | 0 .38 RPM | 244 .36 RPM |
SRP017611_liver | 0 .32 RPM | 125 .89 RPM |