RetrogeneDB ID: | retro_mluc_1342 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429825:4790800..4791393(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000026824 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSMLUG00000004945 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.93 % |
Parental protein coverage: | 98.52 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | LQQVLVLDGRGHLL-GRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTN-PSRGP |
L.Q.L.LDGR..LL.G.L..I.AKQ.LL..KVVVV.CEG..ISG..Y.NKLK.L.FL..R...N.P.... | |
Retrocopy | LGQTLELDGR*RLL<GHLVTIMAKQILLSWKVVVVHCEGLDISGILYKNKLKSLTFL--RQRMN>PTHKL |
Parental | YHFRAPSRIFWRTVRGMLPHKTKRGQAA-LDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLG |
.HF...S.IFWRT....L.HK...G.....D.LKVFDGI.PP.DKK.R.VVPAALK.V..K.T.KFA..G | |
Retrocopy | SHFGSLSLIFWRTLQCKLSHKAQGGLVS<RDHLKVFDGILPPLDKKTRTVVPAALKDVHMKAT*KFANPG |
Parental | RLAHEVGW-KYQAVTATLEEKRKEKAKMHYRKKKQLMRL-RKQAEKNVETKINKFTEVLKTHGLL |
RLA.EV...KYQAVTATLEEKRKEKAK.H..KKKQ.MRL.RKQ.EKNVE.K....TEVLKTHGLL | |
Retrocopy | RLAQEVAC>KYQAVTATLEEKRKEKAKIHFVKKKQRMRL<RKQTEKNVEKKTDSYTEVLKTHGLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |