RetrogeneDB ID: | retro_opri_316 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_514:264155..264482(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSOPRG00000001194 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:HGNC Symbol;Acc:10304] |
Percent Identity: | 89.09 % |
Parental protein coverage: | 54.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RGQAALERLKVFXXXXXXXXXKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEK |
RGQAALE.LKVF.........KKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEK | |
Retrocopy | RGQAALECLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEK |
Parental | AKMHYRKKKQLMRLRKQAEKNVEKKINKFTEVLKTHGLLV |
AKMHYRKKKQLMRLRKQAEKNVEK.INKF.EVLKTHGLLV | |
Retrocopy | AKMHYRKKKQLMRLRKQAEKNVEK-INKFIEVLKTHGLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |