RetrogeneDB ID: | retro_mputfur_853 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896957.1:7856439..7857043(-) | ||
Located in intron of: | ENSMPUG00000011531 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSMPUG00000002604 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:HGNC Symbol;Acc:10304] |
Percent Identity: | 72.06 % |
Parental protein coverage: | 99.51 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MAEG-QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG |
MAEG.QVLVL.G.GHLLG.LAA.VA.QV.LG.KVVVV.CEGI.ISGNF.RNK.KY.AFL.K..NTN.S.G | |
Retrocopy | MAEG<QVLVLCG*GHLLGCLAAMVARQVFLGWKVVVVCCEGIHISGNFCRNK*KYRAFLCKCRNTNSSCG |
Parental | PY-HFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYL |
PY.HF..PS..FW..VRGMLPHKT..GQAALD.LK..DGI.P..DKKK.MVVPAALKV..LK...KF.YL | |
Retrocopy | PY<HFQVPSQVFWWIVRGMLPHKTE*GQAALDHLKMSDGILPAHDKKKWMVVPAALKVMHLKLSGKFTYL |
Parental | GRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGLL |
G.L.HEV.WKYQ.VTAT.EEK.KEKAK.HY.K.K.LMR..K.A.KN.EKKIDK.TEVLKT.GLL | |
Retrocopy | GCLSHEVCWKYQVVTATREEKMKEKAKIHYQKEKHLMRPWKWAKKNAEKKIDK*TEVLKTYGLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005296 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000029892 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000000072 | 16 retrocopies | |
Echinops telfairi | ENSETEG00000017076 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000002932 | 11 retrocopies | |
Loxodonta africana | ENSLAFG00000016213 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000007551 | 14 retrocopies | |
Mustela putorius furo | ENSMPUG00000002604 | 3 retrocopies |
retro_mputfur_1418, retro_mputfur_853 , retro_mputfur_935,
|
Mus musculus | ENSMUSG00000074129 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000025258 | 9 retrocopies | |
Otolemur garnettii | ENSOGAG00000004625 | 7 retrocopies | |
Procavia capensis | ENSPCAG00000004086 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000010251 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011298 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010958 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000020618 | 10 retrocopies | |
Sus scrofa | ENSSSCG00000003166 | 4 retrocopies |