RetrogeneDB ID:

retro_ggor_1739

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:2b:91017014..91017532(+)
Located in intron of:ENSGGOG00000010989
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ENSG00000177350
Ensembl ID:ENSGGOG00000002932
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1739
AAAGTAGTGGTCATGTCCTGTGAGGACATCAACATTTCTGGCAGTTTCTACAGAAACAAGTTAAAGTATCTAGCCTTCTT
CTGCAAGCGGACAAGCACCAACCCTTCCCAAGGACCCTACCATTTATGGGTCCCCAGCCACATCTTTTGGCAGACCACCT
GCGGTAGGCTGCCCCACAAGACCAAGCAAGGCTAGGCTGCCCTAGATCACCTCAAGGTGTTTGATAGAATCCCCTTGCCA
TATGACAAGAAAAAGCAGATGGTGGTTTCTGCCACCCTCGAGGTTGTACGTCCGAAGCCTTGAAGAAAGTTTGCCTACCT
GGGGCACTGGGCTCAGAAGGTTGACTGGAAATACCAGGCAATGACAGCCACCATGGGGGAGAAGAGGAAGGTCTATTATC
AGAAGATCTGTTACCAGAAGAAAAACAGCTCATGAGGCTATAGGAAAAGGCTGAAAAGAACATAGAGACGAACATTGACA
AATACACGAAGGTTCTCAAGGCCCACAGACTCCTAGTC

ORF - retro_ggor_1739 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.11 %
Parental protein coverage: 84.73 %
Number of stop codons detected: 3
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDR
KVVV..CE.INISG.FYRNKLKYLAF..KR..TNPS.GPYH...PS.IFW.T..G.LPHKTK.G.AALD.
RetrocopyKVVVMSCEDINISGSFYRNKLKYLAFFCKRTSTNPSQGPYHLWVPSHIFWQTTCGRLPHKTKQG*AALDH
ParentalLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRK-EKAKIHYRK
LKVFD.IP.PYDKKK.MVV.A.L.VVR.KP.RKFAYLG..A..V.WKYQA.TAT..EKRK....KI.Y.K
RetrocopyLKVFDRIPLPYDKKKQMVVSATLEVVRPKP*RKFAYLGHWAQKVDWKYQAMTATMGEKRKVYYQKICYQK
ParentalK-KQLMRLRKQAEKNVEKKIDKYTEVLKTHGLLV
K.KQLMRL...AEKN.E..IDKYT.VLK.H.LLV
RetrocopyK<KQLMRL*EKAEKNIETNIDKYTKVLKAHRLLV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .14 RPM 202 .37 RPM
SRP007412_cerebellum 0 .24 RPM 267 .43 RPM
SRP007412_heart 0 .16 RPM 188 .53 RPM
SRP007412_kidney 0 .49 RPM 447 .28 RPM
SRP007412_liver 0 .18 RPM 505 .64 RPM
SRP007412_testis 0 .52 RPM 207 .51 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1739 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1739 has 3 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_2200
Macaca mulatta retro_mmul_924
Callithrix jacchus retro_cjac_2755

Parental genes homology:
Parental genes homology involve 21 parental genes, and 109 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000052963 retrocopies
Callithrix jacchus ENSCJAG0000000007216 retrocopies
Cavia porcellus ENSCPOG000000124172 retrocopies
Equus caballus ENSECAG000000158323 retrocopies
Erinaceus europaeus ENSEEUG000000140716 retrocopies
Echinops telfairi ENSETEG000000170762 retrocopies
Felis catus ENSFCAG000000091944 retrocopies
Gorilla gorilla ENSGGOG00000002932 11 retrocopies
Loxodonta africana ENSLAFG000000162133 retrocopies
Myotis lucifugus ENSMLUG0000000494510 retrocopies
Mustela putorius furoENSMPUG000000026043 retrocopies
Mus musculus ENSMUSG000000741293 retrocopies
Otolemur garnettii ENSOGAG000000046257 retrocopies
Ochotona princeps ENSOPRG000000011943 retrocopies
Procavia capensis ENSPCAG000000040864 retrocopies
Pongo abelii ENSPPYG000000102511 retrocopy
Pteropus vampyrus ENSPVAG000000109583 retrocopies
Rattus norvegicus ENSRNOG0000002061810 retrocopies
Sus scrofa ENSSSCG000000031664 retrocopies
Tarsius syrichta ENSTSYG000000087914 retrocopies
Tursiops truncatus ENSTTRG000000054857 retrocopies



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