RetrogeneDB ID: | retro_mmur_1209 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | scaffold_32846:5172..5960(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSMICG00000016606 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 96.97 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MARGPKKHLK.VAAPKH.MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYAL.GDEVKKICMQRFI | |
Retrocopy | MARGPKKHLKHVAAPKH*MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALKGDEVKKICMQRFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
KIDGKV.TDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV | |
Retrocopy | KIDGKV*TDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHP-GSFDVVH |
THDARTIRYPDPLIKVNDTIQID.ETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHP.GSFDVVH | |
Retrocopy | THDARTIRYPDPLIKVNDTIQID*ETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHP<GSFDVVH |
Parental | VKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
VKDANGNSFATRLSNIFVIGKGNKPW.SLPRGKGIRLTIAEER.KRLAAKQSSG | |
Retrocopy | VKDANGNSFATRLSNIFVIGKGNKPWVSLPRGKGIRLTIAEERGKRLAAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |